Preprint articles, posted in advance of peer-reviewed versions.

8) Simion P., Narayan J., Houtain A., Derzelle A., Baudry L., Nicolas E., Cariou M., Guiglielmoni N., Kozlowski DKL., Rodriguez Gaudray F., Terwagne M., Virgo J., Noel B., Wincker P., Danchin EGJ., Marbouty M., Hallet B., Koszul R., Limasset A., Flot J-F.,Van Doninck K. Homologous chromosomes in the asexual rotifer Adineta vaga suggest automixis. bioRxiv. 2020 (View Online).

7) Kozlowski DKL , Hassanaly-Goulamhoussen R, Da Rocha M, Koutsovoulos GD, Bailly-Bechet M, Danchin  EGJ. Transposable Elements are an evolutionary force shaping genomic plasticity in the parthenogenetic root-knot nematode Meloidogyne incognita. bioRxiv. 2020 (View Online).

6) Koutsovoulos G.D., Poullet M., El Ashry A., Kozlowski D.K., Sallet E., Da Rocha M., Martin-Jimenez C., Perfus-Barbeoch L., Frey J-E, Ahrens C., Kiewnick S.*, Danchin E.G.J.* The polyploid genome of the mitotic parthenogenetic root knot nematode Meloidogyne enterolobii. bioRxiv. 2019 (View Online). *co-last authors -> Now accepted in Scientific Data

5) Busch A., Danchin E.G.J., Pauchet Y. Functional analyses of the horizontally acquired Phytophaga glycoside hydrolase family 45 (GH45) proteins reveal distinct functional characteristics. bioRxiv. 2018 (View Online). -> Now published in BMC Evolutionary Biology

4) G.D. Koutsovoulos, E. Marques, M.-J. Arguel, L. Duret, A.C.Z. Machado, R.M.D.G. Carneiro, D.K. Kozlowski, M. Bailly-Bechet, P. Castagnone-Sereno, E.V.S. Albuquerque*, E.G.J. Danchin*. Population genomics supports clonal reproduction and multiple gains and losses of parasitic abilities in the most devastating nematode pest. bioRxiv. 2018 (View Online). *equal contribution. -> Now peer-reviewed and recommended in PCI Evolutionary Biology-> Now published in Evolutionary Applications

3) Rancurel, C., Legrand, L., Danchin, E.G.J. Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life. Preprints 2017, 2017080107 (doi: 10.20944/preprints201708.0107.v1). (View Online). ->Now published in Genes

2) Schiffer PH, Danchin EGJ, Burnell AM, Schiffer AM, Creevey C, Wong S, Dix I,  O’Mahony G, Culleton BA, Rancurel C, Stier G, Martinez-Salazar EA, Marconi A, Trivedi U, Kroiher M, Thorne MAS, Schierenberg E, Wiehe T, Blaxter M. Signatures of the evolution of parthenogenesis and cryptobiosis in the genomes of panagrolaimid nematodes. bioRxiv. 2017 (View Online). -> Now published in iScience

1) Blanc-Mathieu R., Perfus-Babeoch L., Aury JM., Da Rocha M., Gouzy J., Sallet E., Martin-Jimenez C., Castagnone-Sereno P., Flot JF., Kozlowski D., Cazareth J., Couloux A., Da Silva C., Guy J., Rancurel C., Schiex T., Abad P., Wincker P., Danchin E.G.J. Peculiar hybrid genomes of devastating plant pests promote plasticity in the absence of sex and meiosis. bioRxiv. 2016 (View Online). -> Now published in PLoS Genetics